File Reader Classes

class CustomServiceReader(config)

feature/customServiceReader.js

CustomServiceReader.prototype.readFeatures(chr, start, end)

feature/customServiceReader.js

class FeatureFileReader(config)

feature/featureFileReader.js

FeatureFileReader.prototype.readHeader()

feature/featureFileReader.js

FeatureFileReader.prototype.readFeatures(chr, start, end)

feature/featureFileReader.js

class Ga4ghVariantReader(config)

ga4gh/ga4ghVariantReader.js

Ga4ghVariantReader.prototype.readHeader()

ga4gh/ga4ghVariantReader.js

Ga4ghVariantReader.prototype.readFeatures(chr, bpStart, bpEnd)

ga4gh/ga4ghVariantReader.js

Ga4ghVariantReader.prototype.readMetadata()

ga4gh/ga4ghVariantReader.js

class Ga4ghAlignmentReader(config)

ga4gh/ga4ghAlignmentReader.js

Ga4ghAlignmentReader.prototype.readAlignments(chr, bpStart, bpEnd)

ga4gh/ga4ghAlignmentReader.js

Ga4ghAlignmentReader.prototype.readMetadata()

ga4gh/ga4ghAlignmentReader.js

class ImmVarReader(config)

gtex/immvarReader.js

ImmVarReader.prototype.readFeatures(queryChr, queryStart, queryEnd)

gtex/immvarReader.js

class GtexFileReader(config)

gtex/gtexFileReader.js

GtexFileReader.prototype.readFeatures(chr, bpStart, bpEnd)

gtex/gtexFileReader.js

class GtexReader(config)

gtex/gtexReader.js

GtexReader.prototype.readFeatures(chr, bpStart, bpEnd)

gtex/gtexReader.js

class HiCReader(config)

hic/hicReader.js

HiCReader.prototype.readHeader()

hic/hicReader.js

HiCReader.prototype.readFooter(key)

hic/hicReader.js

HiCReader.prototype.readMatrix(key)

hic/hicReader.js

HiCReader.prototype.readBlock(blockNumber, zd)

hic/hicReader.js

class TDFReader(config)

tdf/tdfReader.js

TDFReader.prototype.readHeader()

tdf/tdfReader.js

TDFReader.prototype.readDataset(chr, windowFunction, zoom)

tdf/tdfReader.js

TDFReader.prototype.readRootGroup()

tdf/tdfReader.js

TDFReader.prototype.readGroup(name)

tdf/tdfReader.js

TDFReader.prototype.readTile(indexEntry, nTracks)

tdf/tdfReader.js

class BamReader(config)

bam/bamReader.js

BamReader.prototype.readAlignments(chr, bpStart, bpEnd)

bam/bamReader.js

BamReader.prototype.readHeader()

bam/bamReader.js

class BWReader(config)

bigwig/bwReader.js

BWReader.prototype.getZoomHeaders()

bigwig/bwReader.js

BWReader.prototype.loadHeader()

bigwig/bwReader.js

BWReader.prototype.loadRPTree(offset)

bigwig/bwReader.js

class BufferedReader(config, contentLength, bufferSize)

bigwig/bufferedReader.js

BufferedReader.prototype.dataViewForRange(requestedRange, asUint8)

bigwig/bufferedReader.js