API Overview

While the main use of CNVisualizer is to be a web application, the browser does have functions available to be interfaced with or to extend the functionality of different tracks or views.

The web application is less suitable for

• Forcing other elements to react to the genomic locations.
• Customizing the loading of various files.

The internals are exposed via practically all of the functions, however some are not implemented on specific tracks.

• API Quickstart
• igv
  • IGV Classes
  • Genome Helper Classes
  • Feature Sourcing Classes
  • Track Classes
    • Configuration
  • File Reader Classes
  • Parser Classes
  • BAM Helper Classes
  • BigWig Helper Classes
  • Misc Classes
  • UI Helper Classes
  • Color Helper Classes