igv

• IGV Classes
• Genome Helper Classes
• Feature Sourcing Classes
• Track Classes
• File Reader Classes
• Parser Classes
• BAM Helper Classes
• BigWig Helper Classes
• Misc Classes
• UI Helper Classes
• Color Helper Classes

addAjaxExtensions()

igv-utils.js

addAlphaToRGB(rgbString, alpha)

igv-color.js

attachDialogCloseHandlerWithParent($parent, closeHandler)

igv-utils.js

colorPickerMenuItem(popover, trackView)

trackCore.js

configTrack(track, config)

trackCore.js

constrainBBox($child, $parent)

igv-utils.js

createBrowser(parentDiv, config)

igv-create.js

createColorString(token)

igv-color.js

createGAVariant(json)

variant/variant.js

createVCFVariant(tokens)

variant/variant.js

dataRangeMenuItem(popover, trackView)

trackCore.js

decodeGa4ghReadset(json)

ga4gh/ga4ghAlignmentReader.js

domElementRectAsString(element)

igv-utils.js

encodeSearch(continuation)

encode/encodeSearch.js

formatPopoverText(nameValueArray)

igv-utils.js

ga4ghGet(options)

ga4gh/ga4ghHelper.js

ga4ghSearch(options)

ga4gh/ga4ghHelper.js

ga4ghSearchCallSets(options)

ga4gh/ga4ghHelper.js

ga4ghSearchReadAndCallSets(options)

ga4gh/ga4ghHelper.js

ga4ghSearchReadGroupSets(options)

ga4gh/ga4ghHelper.js

ga4ghSearchVariantSets(options)

ga4gh/ga4ghHelper.js

getCompositeColor(dest, src, alpha)

igv-color.js

getQueryValue(name)

parseUtils.js

getSpinnerObjectWithParentElement(parentElement)

igv-utils.js

gotoLocusFeature(locusFeature, genome, browser)

browser.js

greyScale(value)

igv-color.js

guid()

igv-utils.js

hex2Color(hex)

igv-color.js

isBlank(line)

parseUtils.js

isComment(line)

parseUtils.js

isNumber(n)

igv-utils.js

isStringOrNumber(value)

igv-utils.js

loadBamIndex(indexURL, config, tabix)

bam/bamIndex.js

loadGenome(reference)

genome.js

loadTribbleIndex(indexFile, config)

feature/tribble.js

log(message)

igv-utils.js

makeToggleButton(buttonOnLabel, buttonOffLabel, configurationKey, get$Target, continuation)

igv-utils.js

navigateKaryo(mouseX, mouseY)

karyo/karyo.js

numberFormatter(rawNumber)

igv-utils.js

numberUnFormatter(formatedNumber)

igv-utils.js

paintAxis(ctx, pixelWidth, pixelHeight)

trackCore.js

parseUri(str)

igv-utils.js

presentAlert(string)

igv-utils.js

prettyBasePairNumber(raw)

igv-utils.js

random(min, max)

igv-utils.js

randomGrey(min, max)

igv-color.js

randomRGB(min, max)

igv-color.js

randomRGBConstantAlpha(min, max, alpha)

igv-color.js

removeBrowser()

igv-create.js

rgbColor(r, g, b)

igv-color.js

rgbaColor(r, g, b, a)

igv-color.js

setTrackColor(track, color)

trackCore.js

setTrackLabel(track, label)

trackCore.js

spinner(size)

igv-utils.js

splitStringRespectingQuotes(string, delim)

igv-utils.js

startSpinnerAtParentElement(parentElement)

igv-utils.js

stopSpinnerAtParentElement(parentElement)

igv-utils.js

throttle(fn, threshhold, scope)

igv-utils.js

trackMenuItem(popover, trackView, menuItemLabel, dialogLabelHandler, dialogInputValue, dialogClickHandler, doAddTopBorder)

trackCore.js

trackMenuItemList(popover, trackView)

trackCore.js

trackPopupMenuItemList(popover, viewport, genomicLocation, xOffset, yOffset)

trackCore.js

translateMouseCoordinates(e, target)

igv-utils.js

unbgzf(data, lim)

bam/bgzf.js