Index

A

AbortLoad() (class) addAjaxExtensions() (built-in function) addAlphaToRGB() (built-in function) AlertDialog() (class) AlertDialog.prototype.alertTextContainer() (AlertDialog.prototype method) AlertDialog.prototype.hide() (AlertDialog.prototype method) AlertDialog.prototype.rowOfOk() (AlertDialog.prototype method) AlertDialog.prototype.show() (AlertDialog.prototype method) AlignmentContainer() (class) AlignmentContainer.prototype.contains() (AlignmentContainer.prototype method) AlignmentContainer.prototype.finish() (AlignmentContainer.prototype method) AlignmentContainer.prototype.forEach() (AlignmentContainer.prototype method) AlignmentContainer.prototype.hasDownsampledIntervals() (AlignmentContainer.prototype method) AlignmentContainer.prototype.push() (AlignmentContainer.prototype method) AneuFeatureSource() (class)

AneuFeatureSource.prototype.getFeatureCache() (AneuFeatureSource.prototype method) AneuFeatureSource.prototype.getFeatures() (AneuFeatureSource.prototype method) AneuFeatureSource.prototype.loadFeatures() (AneuFeatureSource.prototype method) AneuTrack() (class) AneuTrack.prototype.altClick() (AneuTrack.prototype method) AneuTrack.prototype.computePixelHeight() (AneuTrack.prototype method) AneuTrack.prototype.draw() (AneuTrack.prototype method) AneuTrack.prototype.getColor() (AneuTrack.prototype method) AneuTrack.prototype.getFeatures() (AneuTrack.prototype method) AneuTrack.prototype.getSummary() (AneuTrack.prototype method) AneuTrack.prototype.loadSummary() (AneuTrack.prototype method) AneuTrack.prototype.paintAxis() (AneuTrack.prototype method) AneuTrack.prototype.popupData() (AneuTrack.prototype method) AneuTrack.prototype.sortSamples() (AneuTrack.prototype method) attachDialogCloseHandlerWithParent() (built-in function)

B

BamAlignment() (class) BamAlignment.prototype.isDuplicate() (BamAlignment.prototype method) BamAlignment.prototype.isFailsVendorQualityCheck() (BamAlignment.prototype method) BamAlignment.prototype.isFirstOfPair() (BamAlignment.prototype method) BamAlignment.prototype.isMapped() (BamAlignment.prototype method) BamAlignment.prototype.isMateMapped() (BamAlignment.prototype method) BamAlignment.prototype.isMateNegativeStrand() (BamAlignment.prototype method) BamAlignment.prototype.isNegativeStrand() (BamAlignment.prototype method) BamAlignment.prototype.isPaired() (BamAlignment.prototype method) BamAlignment.prototype.isProperPair() (BamAlignment.prototype method) BamAlignment.prototype.isSecondary() (BamAlignment.prototype method) BamAlignment.prototype.isSecondOfPair() (BamAlignment.prototype method) BamAlignment.prototype.isSupplementary() (BamAlignment.prototype method) BamAlignment.prototype.popupData() (BamAlignment.prototype method) BamAlignment.prototype.tags() (BamAlignment.prototype method) BamAlignmentRow() (class) BamAlignmentRow.prototype.calculateScore() (BamAlignmentRow.prototype method) BamAlignmentRow.prototype.findCenterAlignment() (BamAlignmentRow.prototype method) BamAlignmentRow.prototype.updateScore() (BamAlignmentRow.prototype method) BamFilter() (class) BamFilter.prototype.pass() (BamFilter.prototype method) BamIndex() (class) BamIndex.prototype.blocksForRange() (BamIndex.prototype method) BamReader() (class) BamReader.prototype.readAlignments() (BamReader.prototype method) BamReader.prototype.readHeader() (BamReader.prototype method) BamSource() (class) BamSource.prototype.getAlignments() (BamSource.prototype method) BamSource.prototype.setViewAsPairs() (BamSource.prototype method) BAMTrack() (class) BAMTrack.prototype.altClick() (BAMTrack.prototype method) BAMTrack.prototype.computePixelHeight() (BAMTrack.prototype method) BAMTrack.prototype.draw() (BAMTrack.prototype method) BAMTrack.prototype.getFeatures() (BAMTrack.prototype method) BAMTrack.prototype.menuItemList() (BAMTrack.prototype method) BAMTrack.prototype.paintAxis() (BAMTrack.prototype method) BAMTrack.prototype.popupData() (BAMTrack.prototype method) BAMTrack.prototype.popupDataWithConfiguration() (BAMTrack.prototype method) BAMTrack.prototype.popupMenuItemList() (BAMTrack.prototype method) BGZFile() (class) BGZFile.prototype.nextBlock() (BGZFile.prototype method) BinaryParser() (class) BinaryParser.prototype.getByte() (BinaryParser.prototype method) BinaryParser.prototype.getDouble() (BinaryParser.prototype method) BinaryParser.prototype.getFixedLengthString() (BinaryParser.prototype method) BinaryParser.prototype.getFloat() (BinaryParser.prototype method) BinaryParser.prototype.getInt() (BinaryParser.prototype method) BinaryParser.prototype.getLong() (BinaryParser.prototype method) BinaryParser.prototype.getShort() (BinaryParser.prototype method) BinaryParser.prototype.getString() (BinaryParser.prototype method) BinaryParser.prototype.getUInt() (BinaryParser.prototype method) BinaryParser.prototype.getVPointer() (BinaryParser.prototype method) BinaryParser.prototype.hasNext() (BinaryParser.prototype method) BinaryParser.prototype.remLength() (BinaryParser.prototype method)

BinaryParser.prototype.skip() (BinaryParser.prototype method) BinnedColorScale() (class) BinnedColorScale.prototype.getColor() (BinnedColorScale.prototype method) BPTree() (class) Browser() (class) Browser.prototype.addTrack() (Browser.prototype method) Browser.prototype.buildViewportsWithGenomicStateList() (Browser.prototype method) Browser.prototype.closeMultiLocusPanelWithGenomicState() (Browser.prototype method) Browser.prototype.disableZoomWidget() (Browser.prototype method) Browser.prototype.emptyViewportContainers() (Browser.prototype method) Browser.prototype.enableZoomWidget() (Browser.prototype method) Browser.prototype.findTracks() (Browser.prototype method) Browser.prototype.fireEvent() (Browser.prototype method) Browser.prototype.getFormat() (Browser.prototype method) Browser.prototype.getGenomicStateList() (Browser.prototype method) Browser.prototype.goto() (Browser.prototype method) Browser.prototype.increaseTrackOrder() (Browser.prototype method) Browser.prototype.loadInProgress() (Browser.prototype method) Browser.prototype.loadTrack() (Browser.prototype method) Browser.prototype.loadTracksWithConfigList() (Browser.prototype method) Browser.prototype.minimumBasesExtent() (Browser.prototype method) Browser.prototype.multiLocusPanelLayoutWithTruthFunction() (Browser.prototype method) Browser.prototype.on() (Browser.prototype method) Browser.prototype.parseSearchInput() (Browser.prototype method) Browser.prototype.reduceTrackOrder() (Browser.prototype method) Browser.prototype.removeTrack() (Browser.prototype method) Browser.prototype.reorderTracks() (Browser.prototype method) Browser.prototype.repaint() (Browser.prototype method) Browser.prototype.repaintWithLocusIndex() (Browser.prototype method) Browser.prototype.resize() (Browser.prototype method) Browser.prototype.search() (Browser.prototype method) Browser.prototype.selectMultiLocusPanelWithGenomicState() (Browser.prototype method) Browser.prototype.setTrackHeight() (Browser.prototype method) Browser.prototype.syntheticViewportContainerBBox() (Browser.prototype method) Browser.prototype.syntheticViewportContainerWidth() (Browser.prototype method) Browser.prototype.toggleCenterGuide() (Browser.prototype method) Browser.prototype.toggleCursorGuide() (Browser.prototype method) Browser.prototype.un() (Browser.prototype method) Browser.prototype.update() (Browser.prototype method) Browser.prototype.updateLocusSearchWithGenomicState() (Browser.prototype method) Browser.prototype.updateWithLocusIndex() (Browser.prototype method) Browser.prototype.viewportContainerWidth() (Browser.prototype method) Browser.prototype.zoomIn() (Browser.prototype method) Browser.prototype.zoomOut() (Browser.prototype method) BufferedReader() (class) BufferedReader.prototype.dataViewForRange() (BufferedReader.prototype method) BWReader() (class) BWReader.prototype.getZoomHeaders() (BWReader.prototype method) BWReader.prototype.loadHeader() (BWReader.prototype method) BWReader.prototype.loadRPTree() (BWReader.prototype method) BWSource() (class) BWSource.prototype.getFeatures() (BWSource.prototype method) BWTotalSummary() (class) BWTotalSummary.prototype.updateStats() (BWTotalSummary.prototype method)

C

CenterGuide() (class) CenterGuide.prototype.repaint() (CenterGuide.prototype method) CenterGuide.prototype.resize() (CenterGuide.prototype method) Chromosome() (class) CNVAccumTrack() (class) CNVAccumTrack.prototype.addToSelectFrom() (CNVAccumTrack.prototype method) CNVAccumTrack.prototype.draw() (CNVAccumTrack.prototype method) CNVAccumTrack.prototype.getFeatures() (CNVAccumTrack.prototype method) CNVAccumTrack.prototype.menuItemList() (CNVAccumTrack.prototype method) CNVAccumTrack.prototype.popupData() (CNVAccumTrack.prototype method) CNVAccumTrack.prototype.removeFromSelectFrom() (CNVAccumTrack.prototype method) CNVAccumTrack.prototype.toggleTrack() (CNVAccumTrack.prototype method) CNVParser() (class) CNVParser.prototype.parseFeatures() (CNVParser.prototype method) CNVParser.prototype.parseHeader() (CNVParser.prototype method) CNVTrack() (class) CNVTrack.prototype.draw() (CNVTrack.prototype method)

CNVTrack.prototype.getFeatures() (CNVTrack.prototype method) CNVTrack.prototype.menuItemList() (CNVTrack.prototype method) ColorPicker() (class) ColorPicker.prototype.configure() (ColorPicker.prototype method) ColorPicker.prototype.hide() (ColorPicker.prototype method) ColorPicker.prototype.show() (ColorPicker.prototype method) colorPickerMenuItem() (built-in function) configTrack() (built-in function) constrainBBox() (built-in function) CoverageMap() (class) CoverageMap.prototype.incCounts() (CoverageMap.prototype method) createBrowser() (built-in function) createColorString() (built-in function) createGAVariant() (built-in function) createVCFVariant() (built-in function) CustomServiceReader() (class) CustomServiceReader.prototype.readFeatures() (CustomServiceReader.prototype method) Cytoband() (class)

D

DataRangeDialog() (class) DataRangeDialog.prototype.configureWithTrackView() (DataRangeDialog.prototype method) DataRangeDialog.prototype.hide() (DataRangeDialog.prototype method) DataRangeDialog.prototype.show() (DataRangeDialog.prototype method) dataRangeMenuItem() (built-in function) decodeGa4ghReadset() (built-in function) Dialog() (class)

Dialog.prototype.configure() (Dialog.prototype method) Dialog.prototype.hide() (Dialog.prototype method) Dialog.prototype.rowOfInput() (Dialog.prototype method) Dialog.prototype.rowOfLabel() (Dialog.prototype method) Dialog.prototype.rowOfOk() (Dialog.prototype method) Dialog.prototype.rowOfOkCancel() (Dialog.prototype method) Dialog.prototype.show() (Dialog.prototype method) domElementRectAsString() (built-in function)

E

EncodeDataSource() (class) EncodeDataSource.prototype.columnHeadings() (EncodeDataSource.prototype method) EncodeDataSource.prototype.dataTablesData() (EncodeDataSource.prototype method) EncodeDataSource.prototype.ingestFile() (EncodeDataSource.prototype method) EncodeDataSource.prototype.ingestJSON() (EncodeDataSource.prototype method) EncodeDataSource.prototype.loadJSON() (EncodeDataSource.prototype method) encodeSearch() (built-in function)

EncodeTable() (class) EncodeTable.prototype.encodeTrackLabel() (EncodeTable.prototype method) EncodeTable.prototype.loadWithDataSource() (EncodeTable.prototype method) EqtlTrack() (class) EqtlTrack.prototype.draw() (EqtlTrack.prototype method) EqtlTrack.prototype.getFeatures() (EqtlTrack.prototype method) EqtlTrack.prototype.paintAxis() (EqtlTrack.prototype method) EqtlTrack.prototype.popupData() (EqtlTrack.prototype method)

F

FastaSequence() (class) FastaSequence.prototype.getIndex() (FastaSequence.prototype method) FastaSequence.prototype.getSequence() (FastaSequence.prototype method) FastaSequence.prototype.init() (FastaSequence.prototype method) FastaSequence.prototype.loadAll() (FastaSequence.prototype method) FastaSequence.prototype.readSequence() (FastaSequence.prototype method) FeatureCache() (class) FeatureCache.prototype.allFeatures() (FeatureCache.prototype method) FeatureCache.prototype.queryFeatures() (FeatureCache.prototype method) FeatureFileReader() (class) FeatureFileReader.prototype.readFeatures() (FeatureFileReader.prototype method) FeatureFileReader.prototype.readHeader() (FeatureFileReader.prototype method) FeatureParser() (class)

FeatureParser.prototype.parseFeatures() (FeatureParser.prototype method) FeatureParser.prototype.parseHeader() (FeatureParser.prototype method) FeatureSource() (class) FeatureSource.prototype.getFeatures() (FeatureSource.prototype method) FeatureSource.prototype.getFileHeader() (FeatureSource.prototype method) FeatureTrack() (class) FeatureTrack.prototype.computePixelHeight() (FeatureTrack.prototype method) FeatureTrack.prototype.draw() (FeatureTrack.prototype method) FeatureTrack.prototype.getFeatures() (FeatureTrack.prototype method) FeatureTrack.prototype.getFileHeader() (FeatureTrack.prototype method) FeatureTrack.prototype.menuItemList() (FeatureTrack.prototype method) FeatureTrack.prototype.popupData() (FeatureTrack.prototype method) formatPopoverText() (built-in function)

G

Ga4ghAlignment() (class) Ga4ghAlignment.prototype.isDuplicate() (Ga4ghAlignment.prototype method) Ga4ghAlignment.prototype.isFailsVendorQualityCheck() (Ga4ghAlignment.prototype method) Ga4ghAlignment.prototype.isFirstOfPair() (Ga4ghAlignment.prototype method) Ga4ghAlignment.prototype.isMapped() (Ga4ghAlignment.prototype method) Ga4ghAlignment.prototype.isMateMapped() (Ga4ghAlignment.prototype method) Ga4ghAlignment.prototype.isPaired() (Ga4ghAlignment.prototype method) Ga4ghAlignment.prototype.isProperPair() (Ga4ghAlignment.prototype method) Ga4ghAlignment.prototype.isSecondary() (Ga4ghAlignment.prototype method) Ga4ghAlignment.prototype.isSecondOfPair() (Ga4ghAlignment.prototype method) Ga4ghAlignment.prototype.isSupplementary() (Ga4ghAlignment.prototype method) Ga4ghAlignment.prototype.mateStrand() (Ga4ghAlignment.prototype method) Ga4ghAlignment.prototype.popupData() (Ga4ghAlignment.prototype method) Ga4ghAlignment.prototype.tags() (Ga4ghAlignment.prototype method) Ga4ghAlignmentReader() (class) Ga4ghAlignmentReader.prototype.readAlignments() (Ga4ghAlignmentReader.prototype method) Ga4ghAlignmentReader.prototype.readMetadata() (Ga4ghAlignmentReader.prototype method) ga4ghGet() (built-in function) ga4ghSearch() (built-in function) ga4ghSearchCallSets() (built-in function) ga4ghSearchReadAndCallSets() (built-in function) ga4ghSearchReadGroupSets() (built-in function) ga4ghSearchVariantSets() (built-in function) Ga4ghVariantReader() (class) Ga4ghVariantReader.prototype.readFeatures() (Ga4ghVariantReader.prototype method) Ga4ghVariantReader.prototype.readHeader() (Ga4ghVariantReader.prototype method) Ga4ghVariantReader.prototype.readMetadata() (Ga4ghVariantReader.prototype method) Genome() (class) Genome.prototype.getChromosome() (Genome.prototype method) Genome.prototype.getChromosomeCoordinate() (Genome.prototype method) Genome.prototype.getChromosomeName() (Genome.prototype method) Genome.prototype.getChromosomes() (Genome.prototype method) Genome.prototype.getCumulativeOffset() (Genome.prototype method) Genome.prototype.getCytobands() (Genome.prototype method) Genome.prototype.getGenomeCoordinate() (Genome.prototype method) Genome.prototype.getLongestChromosome() (Genome.prototype method)

GenomicInterval() (class) GenomicInterval.prototype.contains() (GenomicInterval.prototype method) GenomicInterval.prototype.containsRange() (GenomicInterval.prototype method) getCompositeColor() (built-in function) getQueryValue() (built-in function) getSpinnerObjectWithParentElement() (built-in function) GFFHelper() (class) GFFHelper.prototype.combineFeatures() (GFFHelper.prototype method) gotoLocusFeature() (built-in function) GradientColorScale() (class) GradientColorScale.prototype.getColor() (GradientColorScale.prototype method) graphics (global variable or constant) graphics.dashedLine() (graphics method) graphics.drawArrowhead() (graphics method) graphics.fillCircle() (graphics method) graphics.fillPolygon() (graphics method) graphics.fillRect() (graphics method) graphics.fillText() (graphics method) graphics.setProperties() (graphics method) graphics.strokeCircle() (graphics method) graphics.strokeLine() (graphics method) graphics.strokePolygon() (graphics method) graphics.strokeText() (graphics method) greyScale() (built-in function) GtexFileReader() (class) GtexFileReader.prototype.readFeatures() (GtexFileReader.prototype method) GtexReader() (class) GtexReader.prototype.readFeatures() (GtexReader.prototype method) GtexSelection() (class) GtexSelection.prototype.addGene() (GtexSelection.prototype method) GtexSelection.prototype.colorForGene() (GtexSelection.prototype method) guid() (built-in function) GWASTrack() (class) GWASTrack.prototype.draw() (GWASTrack.prototype method) GWASTrack.prototype.getFeatures() (GWASTrack.prototype method) GWASTrack.prototype.paintAxis() (GWASTrack.prototype method) GWASTrack.prototype.popupData() (GWASTrack.prototype method)

H

hex2Color() (built-in function) HiCReader() (class) HiCReader.prototype.readBlock() (HiCReader.prototype method)

HiCReader.prototype.readFooter() (HiCReader.prototype method) HiCReader.prototype.readHeader() (HiCReader.prototype method) HiCReader.prototype.readMatrix() (HiCReader.prototype method)

I

IdeoPanel() (class) IdeoPanel.prototype.buildPanels() (IdeoPanel.prototype method) IdeoPanel.prototype.panelWithLocusIndex() (IdeoPanel.prototype method) IdeoPanel.prototype.repaint() (IdeoPanel.prototype method) IdeoPanel.prototype.resize() (IdeoPanel.prototype method) ImmVarReader() (class) ImmVarReader.prototype.readFeatures() (ImmVarReader.prototype method) IntervalTree() (class)

IntervalTree.prototype.findOverlapping() (IntervalTree.prototype method) IntervalTree.prototype.insert() (IntervalTree.prototype method) IntervalTree.prototype.logIntervals() (IntervalTree.prototype method) IntervalTree.prototype.mapIntervals() (IntervalTree.prototype method) IntervalTree.prototype.treeInsert() (IntervalTree.prototype method) isBlank() (built-in function) isComment() (built-in function) isNumber() (built-in function) isStringOrNumber() (built-in function)

K

KaryoPanel() (class)

KaryoPanel.prototype.repaint() (KaryoPanel.prototype method) KaryoPanel.prototype.resize() (KaryoPanel.prototype method)

L

loadBamIndex() (built-in function) loadGenome() (built-in function)

loadTribbleIndex() (built-in function) log() (built-in function)

M

makeToggleButton() (built-in function)

N

navigateKaryo() (built-in function)

numberFormatter() (built-in function) numberUnFormatter() (built-in function)

P

paintAxis() (built-in function) PairedAlignment() (class) PairedAlignment.prototype.firstOfPairStrand() (PairedAlignment.prototype method) PairedAlignment.prototype.isPaired() (PairedAlignment.prototype method) PairedAlignment.prototype.popupData() (PairedAlignment.prototype method) PairedAlignment.prototype.setSecondAlignment() (PairedAlignment.prototype method) PaletteColorTable() (class) PaletteColorTable.prototype.getColor() (PaletteColorTable.prototype method) parseUri() (built-in function)

Popover() (class) Popover.prototype.hide() (Popover.prototype method) Popover.prototype.initializationHelper() (Popover.prototype method) Popover.prototype.presentContent() (Popover.prototype method) Popover.prototype.presentTrackGearMenu() (Popover.prototype method) Popover.prototype.presentTrackPopup() (Popover.prototype method) Popover.prototype.presentTrackPopupMenu() (Popover.prototype method) presentAlert() (built-in function) prettyBasePairNumber() (built-in function)

R

random() (built-in function) randomGrey() (built-in function) randomRGB() (built-in function) randomRGBConstantAlpha() (built-in function) ReferenceFrame() (class) ReferenceFrame.prototype.description() (ReferenceFrame.prototype method) ReferenceFrame.prototype.shiftPixels() (ReferenceFrame.prototype method) ReferenceFrame.prototype.toBP() (ReferenceFrame.prototype method) ReferenceFrame.prototype.toPixels() (ReferenceFrame.prototype method) removeBrowser() (built-in function)

rgbaColor() (built-in function) rgbColor() (built-in function) RPTree() (class) RPTree.prototype.findLeafItemsOverlapping() (RPTree.prototype method) RPTree.prototype.load() (RPTree.prototype method) RPTree.prototype.readNode() (RPTree.prototype method) RulerTrack() (class) RulerTrack.prototype.draw() (RulerTrack.prototype method) RulerTrack.prototype.getFeatures() (RulerTrack.prototype method) RulerTrack.prototype.locusLabelWithViewport() (RulerTrack.prototype method)

S

SegParser() (class) SegParser.prototype.parseFeatures() (SegParser.prototype method) SegParser.prototype.parseHeader() (SegParser.prototype method) SegTrack() (class) SegTrack.prototype.altClick() (SegTrack.prototype method) SegTrack.prototype.computePixelHeight() (SegTrack.prototype method) SegTrack.prototype.draw() (SegTrack.prototype method) SegTrack.prototype.getFeatures() (SegTrack.prototype method) SegTrack.prototype.menuItemList() (SegTrack.prototype method) SegTrack.prototype.popupData() (SegTrack.prototype method) SegTrack.prototype.popupMenuItemList() (SegTrack.prototype method) SegTrack.prototype.sortSamples() (SegTrack.prototype method) SegTrack.prototype.toggleSampleHeight() (SegTrack.prototype method) SequenceTrack() (class) SequenceTrack.prototype.draw() (SequenceTrack.prototype method) SequenceTrack.prototype.getFeatures() (SequenceTrack.prototype method) Set() (class) Set.prototype._add() (Set.prototype method) Set.prototype._getKey() (Set.prototype method) Set.prototype._isPseudoArray() (Set.prototype method) Set.prototype._makeKey() (Set.prototype method) Set.prototype._removeItem() (Set.prototype method) Set.prototype.add() (Set.prototype method) Set.prototype.addAll() (Set.prototype method), [1] Set.prototype.clear() (Set.prototype method) Set.prototype.delete() (Set.prototype method) Set.prototype.difference() (Set.prototype method) Set.prototype.each() (Set.prototype method) Set.prototype.eachReturn() (Set.prototype method) Set.prototype.equals() (Set.prototype method) Set.prototype.every() (Set.prototype method) Set.prototype.filter() (Set.prototype method)

Set.prototype.has() (Set.prototype method) Set.prototype.hasAll() (Set.prototype method) Set.prototype.intersection() (Set.prototype method) Set.prototype.isEmpty() (Set.prototype method), [1] Set.prototype.isSubset() (Set.prototype method) Set.prototype.isSuperset() (Set.prototype method) Set.prototype.keys() (Set.prototype method) Set.prototype.makeNew() (Set.prototype method) Set.prototype.makeSet() (Set.prototype method) Set.prototype.map() (Set.prototype method) Set.prototype.notInBoth() (Set.prototype method) Set.prototype.size() (Set.prototype method) Set.prototype.some() (Set.prototype method) Set.prototype.union() (Set.prototype method) setTrackColor() (built-in function) setTrackLabel() (built-in function) spinner() (built-in function) splitStringRespectingQuotes() (built-in function) startSpinnerAtParentElement() (built-in function) stopSpinnerAtParentElement() (built-in function) SVG() (class) SVG.prototype.clearRect() (SVG.prototype method) SVG.prototype.fillPolygon() (SVG.prototype method) SVG.prototype.fillRect() (SVG.prototype method) SVG.prototype.fillRectWithCenter() (SVG.prototype method) SVG.prototype.fillText() (SVG.prototype method) SVG.prototype.innerString() (SVG.prototype method) SVG.prototype.setProperties() (SVG.prototype method) SVG.prototype.setTransforms() (SVG.prototype method) SVG.prototype.string() (SVG.prototype method) SVG.prototype.strokeCircle() (SVG.prototype method) SVG.prototype.strokeLine() (SVG.prototype method) SVG.prototype.strokeText() (SVG.prototype method)

T

T2DVariantSource() (class) T2DVariantSource.prototype.getFeatures() (T2DVariantSource.prototype method) TDFReader() (class) TDFReader.prototype.readDataset() (TDFReader.prototype method) TDFReader.prototype.readGroup() (TDFReader.prototype method) TDFReader.prototype.readHeader() (TDFReader.prototype method) TDFReader.prototype.readRootGroup() (TDFReader.prototype method) TDFReader.prototype.readTile() (TDFReader.prototype method) TDFSource() (class) TDFSource.prototype.getFeatures() (TDFSource.prototype method) throttle() (built-in function) trackMenuItem() (built-in function) trackMenuItemList() (built-in function) TrackMenuPopupDialog() (class) TrackMenuPopupDialog.prototype.updateTips() (TrackMenuPopupDialog.prototype method) trackPopupMenuItemList() (built-in function)

TrackScrollbar() (class) TrackScrollbar.prototype.update() (TrackScrollbar.prototype method) TrackView() (class) TrackView.prototype.appendLeftHandGutterDivToTrackDiv() (TrackView.prototype method) TrackView.prototype.attachDragWidget() (TrackView.prototype method) TrackView.prototype.configureViewportContainer() (TrackView.prototype method) TrackView.prototype.createRightHandGutter() (TrackView.prototype method) TrackView.prototype.isLoading() (TrackView.prototype method) TrackView.prototype.repaint() (TrackView.prototype method) TrackView.prototype.resize() (TrackView.prototype method) TrackView.prototype.setContentHeightForViewport() (TrackView.prototype method) TrackView.prototype.setTrackHeight() (TrackView.prototype method) TrackView.prototype.update() (TrackView.prototype method) translateMouseCoordinates() (built-in function) TribbleIndex() (class) TribbleIndex.prototype.blocksForRange() (TribbleIndex.prototype method)

U

unbgzf() (built-in function) UserFeedback() (class)

UserFeedback.prototype.bodyCopy() (UserFeedback.prototype method) UserFeedback.prototype.hide() (UserFeedback.prototype method) UserFeedback.prototype.show() (UserFeedback.prototype method)

V

Variant() (class) Variant.prototype.popupData() (Variant.prototype method) VariantTrack() (class) VariantTrack.prototype.computePixelHeight() (VariantTrack.prototype method) VariantTrack.prototype.draw() (VariantTrack.prototype method) VariantTrack.prototype.getFeatures() (VariantTrack.prototype method) VariantTrack.prototype.getFileHeader() (VariantTrack.prototype method) VariantTrack.prototype.menuItemList() (VariantTrack.prototype method) VariantTrack.prototype.popupData() (VariantTrack.prototype method) VcfParser() (class) VcfParser.prototype.parseFeatures() (VcfParser.prototype method) VcfParser.prototype.parseHeader() (VcfParser.prototype method) Viewport() (class) Viewport.prototype.addMouseHandlers() (Viewport.prototype method)

Viewport.prototype.addRulerMouseHandlers() (Viewport.prototype method) Viewport.prototype.goto() (Viewport.prototype method) Viewport.prototype.initializationHelper() (Viewport.prototype method) Viewport.prototype.isLoading() (Viewport.prototype method) Viewport.prototype.paintImageWithReferenceFrame() (Viewport.prototype method) Viewport.prototype.redrawTile() (Viewport.prototype method) Viewport.prototype.removeRulerMouseHandlers() (Viewport.prototype method) Viewport.prototype.repaint() (Viewport.prototype method) Viewport.prototype.resize() (Viewport.prototype method) Viewport.prototype.setContentHeight() (Viewport.prototype method) Viewport.prototype.setWidth() (Viewport.prototype method) Viewport.prototype.startSpinner() (Viewport.prototype method) Viewport.prototype.stopSpinner() (Viewport.prototype method) Viewport.prototype.update() (Viewport.prototype method)

W

WIGTrack() (class) WIGTrack.prototype.draw() (WIGTrack.prototype method) WIGTrack.prototype.getFeatures() (WIGTrack.prototype method) WIGTrack.prototype.menuItemList() (WIGTrack.prototype method)

WindowSizePanel() (class) WindowSizePanel.prototype.hide() (WindowSizePanel.prototype method) WindowSizePanel.prototype.show() (WindowSizePanel.prototype method) WindowSizePanel.prototype.updateWithGenomicState() (WindowSizePanel.prototype method)