Welcome to CNVisualizer’s documentation!

CNVisualizer is an extension of the HTML-5 version of the Integrated Genome Viewer, forked off of igv.js.

It extends the project by improving the implementation of segmented CNV tracks as well as adding an implementation for raw CNV read values. It also packages the product in an electron app as an example of using the library that was created.

Contents:

• CNVisualizer User Guide
  • Loading Tracks
    • Using Local Files
  • Segment Track
  • CNV Called Track
  • CNV Accumulated Track
• API Overview
  • API Quickstart
  • igv
    • IGV Classes
    • Genome Helper Classes
    • Feature Sourcing Classes
    • Track Classes
    • File Reader Classes
    • Parser Classes
    • BAM Helper Classes
    • BigWig Helper Classes
    • Misc Classes
    • UI Helper Classes
    • Color Helper Classes

Indices and tables

• Index
• Search Page